All organizations · GSoC 2026 · Science and medicine, Data

OpenMS Inc

Advancing Algorithms & AI for Biomedical Insights

OpenMS is an open-source C++ software library for mass spectrometry data management and analysis with python wrappers. OpenMS houses an expansive modular toolset and ready-to-use scientific workflows in Galaxy, KNIME and nextflow.

python
cython
c++
pytorch
Streamlit

open science
deep learning
algorithms
mass spectrometry
webdev

Project ideas

6 ideas on its 2026 ideas page. Sizes: 2 medium, 4 large. 5 mentors named.

imzML Parser in OpenMS large
Full Python Bindings Using Nanobind large
Accelerating OpenSwathWorkflow for Large-Scale In Silico Spectral Libraries medium
Unify development dependencies using vcpkg medium
Interactive Proteoform-Centric Visualization and Targeted Spectrum Analysis for Top-Down Proteomics large
Optimizing Casanovo for Real-Time De Novo Peptide Sequencing large

Read the ideas page. Ideas are for scope reference; never copy one into a proposal.

History

In GSoC since 2026, 1 year. Projects per year: '26: 3.

On GitHub

25 repositories pushed to in the last year. Main languages: Python (10), C++ (2), Jupyter Notebook (2), CSS (1), Java (1), JavaScript (1).

Links and channels

Website: https://OpenMS.org
Ideas page: https://openms.de/news/gsoc2026/
Contributor guide: https://openms.de/news/gsoc2026/
Source code: https://github.com/OpenMS/OpenMS
Chat: https://discord.com/invite/4TAGhqJ7s5

go deeper in your terminal

git-into-gsoc org "OpenMS Inc" --shortlist
git-into-gsoc repos "OpenMS Inc"
git-into-gsoc issues --org "OpenMS Inc"

or ask your assistant:
"Which OpenMS Inc repositories merge
newcomers' pull requests, and which beginner
issues are still free?"

Those commands read live data: which repositories merge outside pull requests, and which beginner issues nobody has claimed. Install in two minutes.